PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Spipo7G0049300
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Alismatales; Araceae; Lemnoideae; Spirodela
Family bHLH
Protein Properties Length: 133aa    MW: 14804 Da    PI: 10.0171
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Spipo7G0049300genomeMIPS/IBISView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH29.81e-095198455
                    HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                    +h+++Er RR +i +++ +L++l+P +    +k + Ka +L + ++Y+++L+
  Spipo7G0049300 51 SHSIAERARRGKISERMRTLQSLVPGC----DKVVGKALMLDEIINYVQYLR 98
                    8*************************9....555****************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.36E-1645112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.99E-745102No hitNo description
PROSITE profilePS5088815.0274797IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.8E-1648109IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.7E-75197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-853103IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
SSSNLQDADE AKRRKRRKSG PPTKEAAAAA ACGPPAGYIH VRARRGEATD SHSIAERARR  60
GKISERMRTL QSLVPGCDKV VGKALMLDEI INYVQYLRNQ VEFLSFKLAA INHLFFSSYM  120
DLDHLIKSEL VCS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11117KRRKRRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007159982.17e-48hypothetical protein PHAVU_002G283100g
SwissprotQ93W885e-46BH137_ARATH; Transcription factor bHLH137
TrEMBLV7CSS38e-48V7CSS3_PHAVU; Uncharacterized protein
STRINGGLYMA05G38450.13e-45(Glycine max)
STRINGSolyc06g072520.1.11e-45(Solanum lycopersicum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP23583791
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.23e-45bHLH family protein